50 Recent Changes in EBioScience Web retrieved at 13:42 (GMT)
Vacancies in the e BioScience Group See overview About the group The e Bioscience group is part of the laboratory of the AMC, which is headed by Prof. Dr. Antoine ...
Statistics for nop EBioScience Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic ...
Application server Quick test of webapp lib jars If a deployed webapp file depends on some jar which, another version of that jar can be tested without redeploying ...
e BioinfraGateway The e Bioinfra Gateway (e Bioinfra Gateway) is a web application that provides facilitated access to the Grid infrastructure for researchers that ...
WS PGrade Documentation for Workflow Developers General Information Go to the gateway Request an account by sending an email to support at ebioscience .amc .nl ...
Freesurfer on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Supported Data Format (Freesurfer) The input data can be in either dicom ...
Getting Started on the e BioInfra NOTE: we recommend to follow the complete guide from one single computer using the default configurations. This will make prevent ...
See http://git.or.cz/course/svn.html for a crash course in git svn MostaphaAlMourabit 2013 03 14
AMC e BioInfra Gateway (SCI BUS) The AMC e BioInfra Gateway is a web portal based on technology under development by the project funded by FP7 INFRASTRUCTURES 2011 ...
e BioInfrastructure (e BioInfra) The e BioScience Infrastructure (e BioInfra) was initially developed for medical image analysis applications as part of the Medical ...
Documentation This is an unsorted list of handy links and documentation (under construction). Please give us feedback or contribute by editing these pages directly ...
e BioScience News Jan 2013 Silvia Olabarriaga interviewed by Talk for a briefing in and Knowledge Transfer 2012 November 7 Mahdi Jaghoori (NMC, ebiogrid) presented ...
e BioScience Projects The activities of the e bioscience group are currently carried out through participation in various projects, which intersect and overlap at ...
e BioScience Web Menu About http://www.bioinformaticslaboratory.nl/twiki/bin/view/EBioScience/PeopleEBioScience People http://www ...
Jobs or Workflow Components in R There is an isntallation of R available on the Grid but this does not include many packages. To be able to use R, you first to need ...
Creating graphics with R on the grid R is a language and environment for statistical computing and graphics. However, if you want to create graphics with R on the ...
Jobs or Workflow Components in matlab TODO: update mcr version number, 64 bits and make doc consistent in the documentation It is possible to run matlab programs ...
e BioInfra Advanced Page Here you find more detailed information about the e BioInfra software and services (see fig). Grid and Middleware Services Starting from ...
Tools Services Getting Started Documentation Services Gateway, e BioInfraGate Documentation SCI BUS AMC Gateway, SCI BUS AMC Gateway Documentation ...
Silvia's Visit to UFRGS in November 2012 On 12 23 November 2012, Silvia Olabarriaga has visited the Institute of the University of Rio Grande do Sul in Porto Alegre ...
Logistic Regression Double Cross Validation on the e BioinfraGateway Go back to e BioinfraGateway user documentation Description This application is an implementation ...
Data Management on the Grid Grid jobs need to access files located remotely. These files can be sent from the workstation to the job and back every time using a mechanism ...
e bioinfra Gateway: MOTEUR Workflow Developers The e bioinfra gateway pages for MOTEUR workflow developers provide acess to the e bioinfra platform services at the ...
Contact Us! If you wish more information about the research activities of the e bioscience group or to get access to the e BioInfra, please contact us: Bioinformatics ...
FreeSurfer Steps Visualization This "dot" file translate this table: http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable into a more comprehensible diagram. ...
People e BioScience The core of the e bioscience team is composed of: Prof. Dr. Antoine van Kampen SilviaOlabarriaga (group leader) Mark Santcroos ...
BLAST on the e BioinfraGateway Go back to e BioinfraGateway user documentation Instructions Upload one or more nucleotide sequence files and one or more text files ...
Getting Started with Workflow Dashboard Liferay Portlet This wiki page introduces the first time user to the new workflow/provenance dashboard LR portlet.LR stand ...
conference, Amsterdam 2012
Creating Gwendia workflows This page is a collection of common practice (tips and tricks) to creat workflows that run on the EBioInfra. Useful hints The word ...
VBrowser The Virtual Resource Browser (VBrowser) was designed and developed at the Informatics Institute of the University of Amsterdam by Piter de Boer in the VL ...
MOTEUR What is MOTEUR MOTEUR is a workflow management system developed by the Team, in particular Glatard and Montagnat. For more information check: How to get ...
Workflow Repository Best Practices Overview Please follow the instructions on this page to compose and store your workflows in a more structured way, so other ...
DTI Preprocessing on the e BioinfraGateway Go back to e BioinfraGateway user documentation Introduction This application preprocesses the MRI scans and prepare them ...
DTI Atlas on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Data Preparation You need to inspect the output data of the DTI Preprocessing ...
MatthanCaan 2012 04 06 DTI BedpostX processing for probabilistic tractography Go back to e BioinfraGateway user documentation Introduction BedpostX is part of the ...
MOTEUR: Advanced Page This page is intended for advanced users and developers of the e BioInfra. Please read the MOTEUR page first. Details of workflow execution ...
sagasw Overview sagasw (Stand Alone Generic Application Service Wrapper) is a utility that wraps any (non interactive) command line program into a grid job so that ...
MatthanCaan 2012 02 23 DTI Population Registration To do DARTELRegDTI S0 run this matlab binary multi threaded? How many? Should application control no. ...
DTI workflows on EBioScience Documentation on processing of DTI data can be found on leBIC wiki (AMC only, outside AMC). Meeting 09 03 2012 (Paul, Shayan, Matthan ...
Visit Dario Bijker 2 Februari 2012 Beroepsorientatiedag VWO @ AMC Mensen: Antoine van Kampen Evert Mouw Paul Groot Andrel Linnenbank 11:45 ...
Genome Compare on the e BioinfraGateway Go back to e BioinfraGateway user documentation Introduction This application counts and clusters homologous genes to find ...
Workflow Tutorial Step by step introduction to create workflows, and execute these workflows from the Vbrowser GUI with the MOTEUR plugin. Grid certificate Request ...
Data from the 1000 genomes project Source data set Experiment data http://www.1000genomes.org/ Data set NA06984 (selected a random individual) Direct link ...
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Parallel MMBE Goals In CT angiography (CTA) scans, the arteries are often obscured by bone. MMBE is a medical imaging algorithm and software for bone removal from ...
eBioCrawler Introduction: The eBioCrawler is composed of a java based agent that screens the logs files, classifies and links the data, and stores it into the data ...
Classification for Omics Data Application R 2.13.0 libraries for windows All libraries in file : R 2.13.0 library CL Desktop.zip should be extracted in the directory ...
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Previous members of the e BioScience Team Angela Luyf Daniel Weterbeek Yassene Mohammed Carsten Byrman Martin Stam Paul van Hooft ...
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